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Features  /  Anatomic Pathology

🔬 COMPREHENSIVE DIAGNOSTIC MODULES

Anatomic Pathology, Immunohistochemistry & Cytology

Complete tissue-based diagnostic workflows from specimen receipt to final report—guided interfaces, standardized classifications, and full audit trails.

Surgical Pathology
IHC Scoring
Bethesda System
Block & Slide Tracking

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Purpose-Built Workflows for Diagnostic Excellence

OpenELIS Global provides dedicated modules for Surgical Pathology, Immunohistochemistry, and Cytology—each designed with specialty-specific workflows, standardized classification systems, and the structured data capture that accreditation requires. From grossing to final diagnosis, every step is tracked and auditable.

🧫 Surgical Pathology

Complete Tissue Processing Workflow

From specimen receipt to final diagnosis, the Pathology module guides technicians and pathologists through every stage with visual progress tracking, bulk operations, and complete audit trails.

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Grossing
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Blocks
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Slides
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Staining
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Review
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Report


  • Anchored sidebar navigation with visual progress indicators showing completion status

  • Bulk block & slide creation—add 1-50 items at once with auto-generated IDs

  • Staining dashboard with status cards, bulk stain application, and special stain requests

  • Rich text findings & conclusions with referral to IHC when needed

  • Print labels for blocks and slides with barcode support

Key Pathology Features

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Grossing Documentation

Rich text descriptions, specimen condition, measurements

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Block & Slide Management

Location tracking, tissue types, parent-child relationships

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Staining Workflow

H&E, special stains, status tracking, QC failed handling

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Pathologist Review

Slide quality assessment, additional stain requests

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Report Generation

PDF reports with view, download, print, email actions

🎯 Immunohistochemistry

Precision Scoring for Targeted Therapy

The IHC module provides always-visible scoring fields that dynamically adapt to the selected report type—no hidden toggles, no missed fields. Built for breast cancer hormone receptor testing and beyond.


  • Always-visible scoring fields—critical values never hidden behind toggles

  • Dynamic report types: Breast Cancer Hormone Receptor, Dual ISH, Generic IHC

  • Complete breast panel: ER%, PR%, Allred scores, Ki-67, HER2 scoring

  • Molecular subtype classification: Luminal A/B, HER2-enriched, Triple Negative

  • Pathology referral integration—cases referred from surgical pathology linked automatically

Breast Cancer Hormone Receptor Scoring

Hormone Receptors
ER (Estrogen)

% + Intensity + Allred

PR (Progesterone)

% + Intensity + Allred

Proliferation & HER2
Ki-67 Index

% with interpretation

HER2/CerbB2

Pattern + Score (0-3+)

Molecular Subtypes
Luminal A
Luminal B
HER2-enriched
Triple Negative
Basal-like

🔎 Cytology

Bethesda System Guided Workflow

A step-by-step wizard interface for Pap smear evaluation following The Bethesda System, with integrated HPV co-testing and ASCCP guideline recommendations.

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Specimen Adequacy

Satisfactory / Limited / Unsatisfactory

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General Category

NILM / Epithelial Abnormality / Other

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Classification

Squamous / Glandular abnormalities

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HPV Co-Testing

HPV 16/18 genotyping

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Recommendation

ASCCP guideline-driven

Squamous Cell Abnormalities

ASC-US
Low Risk
ASC-H
Intermediate
LSIL
Low Risk
HSIL
High Risk
HSIL with features suspicious for invasion
High Risk
Squamous Cell Carcinoma
Malignant

Glandular Cell Abnormalities

AGC – Endocervical NOS
Intermediate
AGC – Endometrial NOS
Intermediate
AGC – Favor Neoplastic
High Risk
Adenocarcinoma In Situ (AIS)
High Risk
Adenocarcinoma
Malignant

📋 ASCCP Guideline Integration

The recommendation engine combines cytology findings with HPV co-testing results to suggest evidence-based management according to ASCCP guidelines. Clinicians enter their own recommendation first to prevent anchoring bias, then can review and adopt the system suggestion.

Example: HSIL + HPV 16 Positive

Immediate colposcopy or expedited treatment

High-risk finding requires urgent follow-up

Shared Across All Modules

Enterprise features that support quality diagnostics

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Role-Based Access

Technicians, pathologists, and managers see appropriate sections

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Full Audit Trails

Every change tracked with user attribution and timestamps

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PDF Report Generation

View, download, print, and email reports directly

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Cross-Module Referrals

Refer cases from Pathology to IHC with linked records

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Dashboard Overview

Filter by status, “My Cases” view, search by patient

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Label Printing

Generate barcode labels for blocks, slides, and specimens

🚀 Coming Soon

Future Enhancements

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Digital Pathology Integration

View whole-slide images inline (OpenSlide, DICOM WSI)

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Auto-Calculations

Automatic Allred score and molecular subtype suggestions

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Panel Templates

Pre-configured IHC panels (breast, lymphoma, etc.)

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Voice Dictation

Speech-to-text for findings entry

Ready to Modernize Your Pathology Lab?

See how OpenELIS Global’s anatomic pathology modules can streamline your diagnostic workflows.

OpenELIS Global is developed by DIGI at the University of Washington with support from CDC, PEPFAR, and implementing partners worldwide.